¶ ariadne.ai SPATIAL
¶ Overview
SPATIAL is an innovative, cloud-based artificial intelligence platform dedicated to fast and efficient batch analysis of spatial biology data.
¶ Quick start guide
To begin exploring the capabilities of ariadne.ai SPATIAL, follow these steps.
¶ Key Features
¶ 1. Stitching
ariadne.ai SPATIAL leverages advanced image registration techniques to allow for precise tile stitching in 2d and 3d data. Stitching is possible with or without overlap. Please get in touch if you have questions regarding stitching.
¶ 2. Image registration
Besides segmentation, image registration is the key preprocessing step required to achieve the best possible results in spatial biology data analysis.
The ariadne.ai SPATIAL software incorporates state-of-the-art non-rigid image registration techniques, allowing best in class image registration for 2d and 3d data.
¶ 3. Cell segmentation
Accurate cell segmentation is crucial for precise mapping of spatial omics markers. Thanks to our large database of ground truth and pretrained neural networks SPATIAL allows you to accurately segment cells with any staining and in any tissue, even in the brain.
¶ 4. Tissue segmentation
How does your gene or protein expression differ in healthy tissue vs. cancer tissue? Find it out with our tissue segmentation and qantify the spatial neighborhoods of the tissues in your experiment individually.
Please contact us for a custom offer for tissue segmentation
¶ 5. Spatial analysis
Quantify the Spatial neighborhoods in your experiment using analyses like:
- Recurrent spatial neighborhoods (RCN)
- Automated gating using t-SNE and Umap.
- Neighborhood enrichment scores
- ...
¶ Use Cases
¶ Technologies
- Spatial proteomics.
- Spatial transcriptomics.
- Multiplex immuno-histo chemistry.
- Any other spatial omics technique like serial immuno-histo chemistry, spatial mass cytometry or spatial metabolomics.
¶ Compatibility
We tested our software for compatibility with many protocols and devices. Please find the most important ones below:
- Akoya Biosciences Codex ®
- Canopy Biosciences Cellscape
- Cell Signalingling technology ® SignalStar ™
- 10xGenomics Xenium
- 10xGenomics Visium HD
¶ User Account and Settings
¶ 1. Account creation and management
Go to https://spatial.ariadne.ai and click on Sign Up to create your account...
¶ 2. Data sharing
¶ Basic usage and step-by-step guides
¶ 1. Data management and upload.
¶ 2. Navigation
¶ a. General navigation
¶ b. Left panel (Visualization)
¶ c. Right panel (Quantification)
¶ 3. Submitting Jobs
¶ Technical Specifications
¶ 1. Supported data formats
We support all data formats. If you submit an unknown format we will implement it shortly. Your datasets will be converted into our own internal format to ensure best performance in SPATIAL
¶ 2. System requirements for optimal performance
ariadne.ai SPATIAL has no specific system requirements and works in any current web browser.
¶ Legal and Compliance
¶ 1. Data privacy and security information
You can find our privacy policy at https://ariadne.ai/privacy/
¶ 2. Compliance with relevant industry standards
ariadne.ai SPATIAL is intended for research use only.
¶ User Feedback and Community
¶ 1. Customer testimonials
¶ 2. User feedback
We value your feedback and suggestions for further improvement of ariadne.ai SPATIAL. Please submit your feedback here.
¶ Conclusion
ariadne.ai SPATIAL sets new standards in simplifying spatial biology analysis. It covers the full spatial biology analysis workflow and delivers top-tier accuracy in registration and segmentation. SPATIAL is available as Software as a Service or as full service. SPATIAL can also be customized to fit your needs. Our team is available to support you during the whole analysis process of your data.
Learn more about ariadne.ai on the official website or get in touch with us.