¶ Quick start guide
To begin exploring the capabilities of ariadne.ai SPATIAL, follow these steps:
¶ Setup
- Open https://spatial.ariadne.ai
- Login or sign up depending whether you have an account or not.
- The dataset management window will appear
- Click on one of your existing datasets to start working with it or click on + DATASET to initiate and upload a new dataset.
If you do so, the upload window will appear where you can upload and submit your new dataset.
¶ Basic Usage
The SPATIAL software consists of 3 main panels. On the left hand side you find the Visualization panel, which contains all your data separated into single layers and sorted in categories. A click on the eye icon will show or hide layers. While a click on the layer name allows you to set the color, the opacity, as well as brightness and contrast.
On the right hand side you can find the Statistics panel which allows you to review marker intensities and the results of the statistic jobs you submitted. In addition you can do manual gating using the plot to select cells based on their marker intensities. Hold down shift and drag with the left mouse button to make a selection.
The top panel is the Navigation panel. It depicts the current x, y and z coordinate as well as the zoom level. All of them can be changed by manually typing a number and pressing the Enter-key.
Use the Center-button to relocate your dataset.
To start analyzing your data click on the NEW JOB button (top left) and submit your first analysis jobs.
- Registration
- Segmentation
- Intensity mapping
- Recurrent neighborhoods
